After his retirement, Moya was named Subaru's Sporting Director. He worked for the team from 2003 to 2006, when despite of the Solberg's Championship the first year the decadence of the team began. It was not only his fault, he shared it with Howarth and Lapworth.
The second chapter was worse. In 2010 Moya became the Team Manager of a private rallying team: Nupel Racing Team. Although Pons won the SWRC title, several drivers who ran the Spanish Championship left the team due to their problems with Moya. The team disappeared the following year. Then it was revealed that the main sponsor got public money in an illegal way, ending everything in court of justice. Several books could be written with the stories of this team.
To conclude, Moya was twice in the middle of the mess. He was a great co-driver, which doesn't mean he'd be a good manager, principal or whatever. Sainz was the brilliant part of both.
